Minor Groove Interaction of Bilastine: Experimental Elucidation of Its Binding Behaviour with ct-DNA
Bodapati ATS, et al. Journal of Molecular Structure, 2024, 1301, 137385.
This case study demonstrates the experimental characterization of Bilastine binding to calf thymus DNA (ct-DNA), emphasizing its minor groove association. UV-visible spectroscopy revealed hypochromic effects and yielded a binding constant on the order of 10⁵ M⁻¹, indicating moderate affinity. Fluorescence quenching experiments, performed across 298-308 K, showed temperature-dependent static and dynamic quenching, enabling thermodynamic analysis that identified hydrophobic forces as the dominant driving mechanism (ΔH° ≈ 41.5 kJ mol⁻¹; ΔS° ≈ 236 J mol⁻¹ K⁻¹). Site-specific probing using ethidium bromide and Hoechst dyes, together with viscosity and DNA melting assays, experimentally confirmed Bilastine's preference for the minor groove rather than intercalation. Circular dichroism spectra demonstrated that the binding event did not perturb the B-form DNA conformation. Complementary molecular docking positioned Bilastine along the DNA minor groove curvature, reinforcing the experimentally observed binding mode.